PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00063860001
Common NameGSBRNA2T00063860001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NF-YA
Protein Properties Length: 181aa    MW: 20509.3 Da    PI: 11.198
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00063860001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.59.3e-334399158
            CBFB_NFYA  1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58
                         ++p+YVNaKQyq+Il+RRq+Rak+e ekkl +ksrkpylheSRh+hA+rRpRg+gGrF
  GSBRNA2T00063860001 43 QDPVYVNAKQYQAILRRRQARAKAELEKKL-IKSRKPYLHESRHQHAIRRPRGNGGRF 99
                         68****************************.**************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.5E-3541102IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.08842102IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.0E-244567IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.9E-284599IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS0068604767IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.0E-247699IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MATVSRQRIG DNICQGNPMK RLTYVPYGGM PHSRMPLPPE MAQDPVYVNA KQYQAILRRR  60
QARAKAELEK KLIKSRKPYL HESRHQHAIR RPRGNGGRFA KKTNTKAAQQ KAGEKRNACR  120
TQSPTSSSSD QPEAWNDENR TQSKEMQSTA CKRRKEADCS GQQWNIISSN HPSQARLAIK  180
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-194399258NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.21781e-148bud| flower| leaf| microspore| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00063860001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBNU338841e-145U33884.1 Brassica napus clone bncbf-b1 CCAAT-binding factor B subunit homolog mRNA, complete cds.
GenBankBNU338851e-145U33885.1 Brassica napus clone bncbf-b2 CCAAT-binding factor B subunit homolog mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009111054.11e-115PREDICTED: nuclear transcription factor Y subunit A-9-like
SwissprotQ945M92e-90NFYA9_ARATH; Nuclear transcription factor Y subunit A-9
TrEMBLA0A078HG421e-133A0A078HG42_BRANA; BnaA01g25500D protein
TrEMBLM4E5591e-133M4E559_BRARP; Uncharacterized protein
STRINGBra023913.1-P1e-132(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM132681829
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.13e-75nuclear factor Y, subunit A9
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]